Quickstart

To do all of the above:

1. Put a multi fasta file of genome sequences in one folder.
2. download this repository.
3. run perl align.pl --multi <your_fasta_file> --out <your_alignment_results>.
4. run perl annotate.pl --in  <your_alignment_results>  --out <funct_annot_output_file>.
5. open the output file, and read the annotations.